When I bought my Massey 2823PS = to Prestige, I asked the dealer the best break in Procedure. I always thought to run them sorta easy, varying engine speed etc. He said with the Kohler Command you want to run it hard (full throttle) as to break it in properly. He had one customer that had an issue like yours and related it to the break in. I only had it for 10 hours so I'm speaking from what was told to me. My tractor had the same 23HP motor as yours.
He told me that the Kohlers were designed to be run hard and it will not hurt to run hard from new.
He also said to run conventional oil.
I asked this same question here, Syn / Conv. about my new Ingersoll. While I did get varying answers, majority said they were running conventional oil and had 300+ hours with no smoke etc. I was also told to break in my Vanguard in the same manner, run it hard. The reason I was told this: These new motors are built to more exact tolerances than older models so running hard is not detrimental to them.
On another note, my Gravely (kohler) is 27 years young and doesn't smoke at all, always used regular 30 wt since new.
I would switch back to conventional oil.
Good Luck