That's not something I would think JD would have a computer track...but if that's what the error code means, then I would start with:
-examining the wiring harness for the pto circuit for any spots where the insulation has been worn through
-put a inline ammeter in the pto circuit, where you can what how it changes over time.
Perhaps there's some heat-related issue with the pto clutch, so when it gets hot it uses more current. And maybe it gets to the point where it drops the overall voltage too low, but it's not enough to blow the fuse (depending on where the fuse is, maybe it can draw too much from the engine charging circuit, which may not go through that fuse...