An update:
I received the new yoke, and to my surprise, it's exactly the same design as the old one, so apparently, the set-screw design wasn't a modification.
Also, the instructions indicate there's no pin in there at all, so I'm not sure what I drove out with a punch - maybe just some Loctite goo? It would explain why I was never able to find the pin.
Anyhow, after installing the replacement charge pump, and re-installing the yoke and driveshaft, I started it up, and...no improvement

. I opened the air bleed line in the back and manipulated the drive control to see if it would help bleeding the air. No improvement.
After running for a few, minutes, however, the engine really started to struggle - not sputtering like it was running out of gas, but bogging down like it was getting ready to seize. I quickly shut it down and went inside for a cold adult beverage so I could think about this a bit more.
So, putting some pieces together...here's what I'm now thinking...the engine oil level is fine and the oil is still very clean. Recall the original charge pump visually looked ok and a replacement didn't fix the problem, so I'm thinking the issue isn't with the charge pump itself. After I shut it down, I opened the small access charge pressure testing port on the top of the pump - I expected to see fluid in there but didn't. And I recalled no fluid came out when I swapped charge pumps. So...I'm thinking it's the hydro pump that's bogging the engine, and that it's bogging the engine because it's oil-starved, and that it's oil-starved because of a blockage between the reservoir and the charge pump. Makes sense? Thoughts? Alternatives?
If my hypothesis is correct, I hope the hydro pump isn't irreparably damaged. Seems to me the easiest thing to do at this point is to drop the filter to at least see if there's fluid in there. A lack of fluid suggests a blockage somewhere between the filter and the reservoir. If there is fluid in there, the blockage (assuming there is one) would have to be between the filter and the charge pump. Maybe the filter itself is bad? Off the top of my head it's a WIX 51410, which, according to the interweb, ought to be the correct filter. Thinking back, I didn't pre-fill the filter, and maybe that was an important step to "prime" the circuit?